5_prime_UTR_variant [SO_0001623]

A UTR variant of the 5’ UTR.

5_prime_UTR_variant

ID: SO_0001623

Class

A UTR variant of the 5' UTR.

EBI term: 5prime UTR variations - In 5prime UTR (untranslated region).

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Classification

UTR_variant

Alternative Names

Synonym	Scope	Reference
ANNOVAR:UTR5	related synonym	//www.openbioinformatics.org/annovar/annovar_download.html, VAR
five prime UTR variant	exact synonym
VEP:5_prime_UTR_variant	exact synonym	VAR
untranslated-5	exact synonym	//ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd
VAAST:5_prime_UTR_variant	exact synonym	VAR
snpEff:UTR_5_PRIME	exact synonym	VAR
Jannovar:5_prime_utr_variant	exact synonym	//doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
VAAST:five_prime_UTR_variant	exact synonym	VAR
5’UTR variant	exact synonym
5PRIME_UTR	exact synonym	//ensembl.org/info/docs/variation/index.html
Seattleseq:5-prime-UTR	exact synonym	VAR

References

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an style="color:#ff79c6">"FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "VEP:5_prime_UTR_variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "snpEff:UTR_5_PRIME", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "Seattleseq:5-prime-UTR", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "five prime UTR variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "VAAST:five_prime_UTR_variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "VAAST:5_prime_UTR_variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_related_synonym", "label": "ANNOVAR:UTR5", "type": "http://purl.obolibrary.org/obo/so#VAR" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [] }

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